1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aataaagcaactgtatgttgtatttctttcttgtttgatttcaaatgactgcttaaggtgtgttctgtctttcttatatgaactctgtaactgtaaacagTATAAATCACGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAA
species | Glycine max |
transcript | GLYMA07G01240.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAG TATAAATCATGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACEST: gi|192310001|gb|FK000621.1|FK000621
genomic: CCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttct ... ctgtaaacagTATAAATCACGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAAC
EST: CCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAG TATAAATCACG
genomic: CCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttct ... ctgtaaacagTATAAATCACG
tgactgcttaaggtgtgttctgtctttcttatatgaactctgtaactgtaaacagTATAAATCACGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAA
ctgtaac putative branch site (score: 3)
tttcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaagcaactgtatgttgtatttctttcttgtttgatttcaaatgactgcttaaggtgtgttctgtctttcttatatgaactctgtaactgtaaacagTATAAATCACGAATACAAGGAGTGGAATGACAAGAATCCACAGGTAACAACATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAA
- - - gcaactg
- - - - - - - -tgttgta
- - - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - -tgactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac