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gtaccagacaaattatttttctttttactgttaaagttctatatagaaaattagtattacgtggaccatttttttctgatattctatgatattcattggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
species | Glycine max |
transcript | GLYMA07G00430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|209713481|gb|BW679271.1|BW679271
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|5676817|gb|AI937947.1|AI937947
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTNTGNGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213601517|gb|DB970433.1|DB970433
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTEST: gi|24136428|gb|BU926938.1|BU926938
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|209722553|gb|BW682651.1|BW682651
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213616520|gb|DB965718.1|DB965718
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|120530321|gb|EH258454.1|EH258454
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|192305155|gb|FG993935.1|FG993935
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|120532224|gb|EH260357.1|EH260357
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|209728747|gb|BW655427.1|BW655427
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213618474|gb|DB967711.1|DB967711
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213616575|gb|DB965745.1|DB965745
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213607085|gb|DB957061.1|DB957061
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCTEST: gi|213604715|gb|DB960480.1|DB960480
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGEST: gi|209700893|gb|BW683110.1|BW683110
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTG
EST: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTG GTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
genomic: TCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagaca ... ttggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
ttagtattacgtggaccatttttttctgatattctatgatattcattggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
ttctgat putative branch site (score: 3)
atttttttctgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccagacaaattatttttctttttactgttaaagttctatatagaaaattagtattacgtggaccatttttttctgatattctatgatattcattggtgacagGTGAAGGTGACCTTTTAACTGGTGGAGATTTATATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT