Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgtatattttgaaaaatattttacaatgaatctcttttcaatcttttatttgtactggaaagttggatgctgatcaactaatctttgaacagGTACGTGGGTTGCTCAAGGAGTGTATAAAAGATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGG

Basic information

species Glycine max
transcript GLYMA06G47630.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G47630.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os10g40550.1 (Oryza sativa), 3'ss of exon 7
gcatgtatattttgaaaaatattttacaatgaatctcttttcaatcttttatttgtactggaaagttggatgctgatcaactaatctttgaacagGTACGTGGGTTGCTCAAGGAGTGTATAAAAGATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAG-ATGAGG
   | | |||||        || |   | |   |   | ||          |||||  || |  |||| |   |  |||  |  | |      ||||         |||||  ||  |||| || || || || || ||||   | ||  | |||||||| |||||||| || |||||||||||||||| |  |  
--gtatgtatttc------catctcgaacttggtaattattaggataccattttgtgttgcacggttgaaaattattcatttt-tatacctgtagGTGTACAAAAAGCTCAGTGAAAGTATTAAGGACATTGATGGTGCAAGGATGGAAGATAACAAATTCTGTGTGTCCGTTCATTACCGCAATGTAGCACCAC-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatcttttatttgtactggaaagttggatgctgatcaactaatctttgaacagGTACGTGGGTTGCTCAAGGAGTGTATAAAAGATATAGAAGGAGCAACAGTTGAGAACAACAAATTTTGTGTGTCTGTGCATTACCGCAATGTAGATGAGG
                                      aactaat  putative branch site (score: 2)
                                            tcttt  CT-rich tract
      ttttatttgta  TA-rich tract