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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttatgaatacatgattatttttcaccttttgtaatttggatggttacaacaactattattacatcaagcctttgtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAGTTATGATTTGGATGTTACCATTCGTGTGCCGTGCAATAGGCTTTGCCTG

Basic information

species Glycine max
transcript GLYMA06G44390.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193416477|gb|FK384969.1|FK384969
EST:     CCAGCATTTCACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: CCAGCATTTCACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|193414786|gb|FK381412.1|FK381412
EST:     CCAGCATTTCTACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: CCAGCATTTC-ACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|20448672|gb|BQ252796.1|BQ252796
EST:     AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|193403897|gb|FK366147.1|FK366147
EST:     CCAGCATTTCTTACTATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: CCAGCATTTC--AC-ATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|209720745|gb|BW657747.1|BW657747
EST:     AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|193336860|gb|FK305340.1|FK305340
EST:     CCAGCATTTCACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: CCAGCATTTCACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
EST: gi|19346316|gb|BM891196.1|BM891196
EST:     AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAG                         ATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG
genomic: AAATGCATTGTTTACCAGCATTTCACATTGTTTACAATTTTTACATTGAGgtatgttatg ... gtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaatttggatggttacaacaactattattacatcaagcctttgtctttgtagATTAATCAAAAGTCTAATAGCTTTTTGGTGAGGAAAGTTGTGGAGGATGAGTTATGATTTGGATGTTACCATTCGTGTGCCGTGCAATAGGCTTTGCCTG
                                        cctttgtcttt  CT-rich tract
                   aacaactattatta  TA-rich tract