Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttctttcaatgtttttcctgagttgtattcatttattctaaaccttttgcatatatgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTG

Basic information

species Glycine max
transcript GLYMA06G42840.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42840.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 5
---------------gtacgttttctttcaatgtttttcctgagttgtattcatttattctaaaccttttgcatatatgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTG
                 | |  | | || | |  | || ||  ||||| ||  |||   ||   |  |       |     |||||||| ||||||| ||||| ||||| ||||||||||| ||||| ||||| || ||||||
gtatgacttatgtgaacaaggctacatt-acttctcttgcttggttgt-ttgttttgaactggtctctaattgcttgctgatacagGTTGATCCTCTCACTCATCAAGTCAAGCTATGTGACTTTGGAAGTGCAAAGGTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193500521|gb|FK464052.1|FK464052
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193656739|gb|FK603771.1|FK603771
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193328173|gb|FK293410.1|FK293410
EST:     CCTCAAAATCTTTTG                         GTTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCGA
genomic: CCTCAAAATCTTTTGgtacgttttc ... atgactacagG-TTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAA
EST: gi|17023095|gb|BM094129.1|BM094129
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|11689096|gb|BF596772.1|BF596772
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193403386|gb|FK367708.1|FK367708
EST:     CCTCAAAATCTTTTG                         GTTCATCCTTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCGA
genomic: CCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCC-TCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAA
EST: gi|120531619|gb|EH259752.1|EH259752
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|6502169|gb|AW203542.1|AW203542
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|9819612|gb|BE555125.1|BE555125
EST:     ATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|207763538|gb|GD736653.1|GD736653
EST:     ATACCGCCCTGCGAGTTTGTCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
EST: gi|193585798|gb|FK542122.1|FK542122
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTT
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTT
EST: gi|42723166|gb|CK769065.1|CK769065
EST:     ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTG                         GTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA
genomic: ATACCGCCCTGCGAGTTTGCCATAGGGATGTAAAGCCTCAAAATCTTTTGgtacgttttc ... atgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttcctgagttgtattcatttattctaaaccttttgcatatatgactacagGTTCATCCTCTTACTCACCAAGTTAAGCTATGTGATTTTGGGAGTGCCAAAGTTCTG
                          ttctaaa  putative branch site (score: 2)
                tattcatttattctaa  TA-rich tract