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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatataagtactttccatcctactataatactgtacaggaaaagaacaagtaaattacttttgatttgttcaaaactaaaatttgaatttccatattggagaaaggtagtataataatccactatttgtgttatgttttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCCGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA

Basic information

species Glycine max
transcript GLYMA06G41630.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41630.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 5
gtatatataagtactttccatcctactataatactgtacaggaaaagaacaagtaaattacttttgatttgttcaaaactaaaatttgaatttccatattggagaaaggtagtataataatccactatttgtgttatgttttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCCGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA
       || | | |||   ||   | | | ||     ||  ||  ||    |    | | |  |   || |   ||| | | | |  | |   |||            |||| |   ||   | |   |   || | ||  ||||||||  | |||||||||||||||||||||||  | || |||||||| || ||  |||||||||||||||| ||||| |||  ||| ||||| ||||||||||
------gtatgca-tttgtttctgtccacattaggcctcaaaaattgatttgggtcgtaagtacta--ttatctgaaagtgacaatacattcatcattc---------atagttttggaa---attgactacattgttttgaatgcagAACTTGAAATCAGACCTCAGTTTGTGGCAATTGGGCACATTACCACCAGGCCTAATAGCATTCCATGGCCATGTACACGTTATAGATCCCTTCTGGCACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatattggagaaaggtagtataataatccactatttgtgttatgttttatgcagAATATAAAATCAGACCTCAGTTTGTGGCAGCTAGGAACATTACCCCCCGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACA
                tagtataataat  TA-rich tract