Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttccatgagatctgcacatatttaattatactttgtatgtatattgttaattatatgtactttcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG

Basic information

species Glycine max
transcript GLYMA06G41510.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41510.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtttcca--tgagatc-tgcacatatttaat-tatactttgtatgtatattgttaattatatgtactt-----tcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG
||||| | |    | | | | | |||   ||||||  ||   ||  |     | |   ||    |||| ||      |   | ||||| |||||||||||||||||  ||||||||||||||||||| ||  || |||||||||| ||||||||  ||
gtaagctgcttgctaaaaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccagGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGG

upper sequence: GLYMA06G41510.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtaagtttccatgagatctgcacatatttaattatactttgtatgtatattgttaattat-atgtactttcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG
                             | |  || ||    | |       |  ||  || ||||     | |  |  |  | || || |  | | ||| ||||| ||||||||||| || || || || |||||||| ||||||||||| ||||| || ||||||||||| |||
gtaagctttcatctaatatgcactaaaacatggatctattgtgtgtttgtgcgtaaaaacatgctttcatgttgtgcttatgttgattattttatcttactccagGCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014430|gb|CX701172.1|CX701172
EST:     TTCCCATAGCTTTAGATGTGGCAAGAGGCTT-GAATATCTTCATAATGGG                         GCAGTTCCTCCTTTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTG
genomic: TTCCCATAGCTTTAGATGTGGCAAGAGGCTTGGAATATCTTCATAATGGGgtaagtttcc ... ttcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catatttaattatactttgtatgtatattgttaattatatgtactttcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG
                            tgttaat  putative branch site (score: 3)
                                           ctttcacttc  putative PPT
     ttaattatactttgta  TA-rich tract