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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtgtaaattgtttgtccacaggaagggaatggaatcacataaaaattcatgtttatttgaactttctgctttgaagttccagaacataaaatacttggtgatgaaaatgtatagctttttatttctttgggatgtttgtttatacattatcttcttgtaaaatgggtggttttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAA

Basic information

species Glycine max
transcript GLYMA06G36620.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36620.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 3'ss of exon 5
gtctgtgtaaattgtttgtccacaggaagggaatggaatcacataaaaattcatgtttatttgaactttctgctttgaagttccagaacataaaatacttggtgatgaaaatgtatagctttttatttctttgggatgtttgtttatacat-tatcttcttgtaaaatgggtggttttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAA
                                                                                      || ||||      |  ||   | | |||   |  |  |  ||| | ||  | | ||     |||| ||| | |||      |  |    |   ||||||||||| || ||||||||||| ||||||||||| ||||| ||  | ||||| ||  | || ||| | |||||| | |||||||||||||| |||   | ||
------------------------------------------------------------------------------------taaatataactgtggtcatgcacacattgtgagggataatggttcct-ggactttatgccatgacatatatttacttaattgctatgcctgtgcttttcagGCTGAATGCTATCATTACCTTTTTGATGCTGCCATCAAGCTCTATCAATTGGGTATTGATTGGACAACTCCTGAGCATGGTCCAATAAACAGTGCCAAAA

upper sequence: GLYMA06G36620.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g02480.t01 (Vitis vinifera), 3'ss of exon 5
gtctgtgtaaattgtttgtccacaggaagggaatggaatcacataaaa-attcatgtttatttgaactttctgctttgaagttccagaacataaaatacttggtgatgaaaatgtatagctttttatttctttgggatgtttgtttatacattatcttcttgtaaaatgggtggttttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAA
                            |    ||  ||  || | || |||  | |  | |  | |    |  | |     ||       ||   |  || | | |     | | |    |||| | | ||| |  | ||  ||  |  || ||||| |  |  | | |       |   ||||||||| || || || || || ||||||||||||||||||||| ||||||| ||  | ||||||||||||||  ||||||||||||| ||||    | |  
----------------------------gtttgtgttatttcaaagaatatttgtatgaagtccatcaaattaatgtatgtgtcacatttgtagtttttttaggggtttctttatgttttgttttttctttttagtttattgtttagtttatgatcttttgcttgacttg------ctccctcagGCTGAATGCTACCACTATCTCTTTGATGCTGCTATCAAACTTTACCAATTGGGCCTTGACTGGTCTACTCCAGATCATGGTCCAATTAAAAAATATGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9565785|gb|BE475294.1|BE475294
EST:     TCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCNTAAA-CTCAN                         GCTGAGTGTTATCATTACCTGGTTGATGCTGCTATCAAACATCACCAATTA
genomic: TCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGC-TAAAACTCAGgtctgtgtaa ... tttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTA
EST: gi|37994882|gb|CF806471.1|CF806471
EST:     ATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAG                         GCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTA
genomic: ATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAGgtctgtgtaa ... tttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggatgtttgtttatacattatcttcttgtaaaatgggtggttttatttcagGCTGAGTGTTATCATTACCTGTTTGATGCTGCTATCAAACTTCACCAATTAGGATTGGACTGGTCTACTCCTAATCATGGTCCAATAAAAAGTCTTAGAA
                                            ttttatttc  CT-rich tract
         tttgtttatacattat  TA-rich tract