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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaacagtgacattctctccattgtttttcctgtgctttgaaacagctttccccctctcataattagaaattttataatcatggacttcaattttttattagctctatcattcatagaatttcaatatcaattttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG

Basic information

species Glycine max
transcript GLYMA06G36130.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 6
---gtatcaacagt--gacattctctccattgtttttcctgtgctttgaaacag---ctttccccctctcataattagaaattt-tataatcatggacttcaattttttattagctctatcattcatagaatttcaatatcaat--------tttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG
    | ||| ||    |||  | | |  | |    |  || ||||| |||| ||   ||||     |    |  |||  ||||| | |||| |  |  ||   || ||  |     ||||  ||  | ||||  ||| ||  ||        |||||||| ||||||||||| |||||||| ||||| ||||| |||
gtattgtcatcaaatggaccctttgttaactcaagtatctttgctt-gaaatagtgtcttttgatttgctgtttttaataatttctctaattagagcttttctttcttcttgtaaactatt-ttggtggaatgacaacattgatattataaatttgcagCGGCAAACATTTTGTTGACTGAGAATGGCGATGTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611344|gb|DB972745.1|DB972745
EST:     TGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAG                         CTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG
genomic: TGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAGgtatcaacag ... aattttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG
EST: gi|254339249|gb|GR847966.1|GR847966
EST:     TGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTACAG                         CTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG
genomic: TGCAATTGATTACCTACATAATGAAGGAAAAATTCATAGAGACATTAAAGgtatcaacag ... aattttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcaattttttattagctctatcattcatagaatttcaatatcaattttgcagCTGCAAACATTTTATTGACTGATAATGGTGATGTAAAG
                             atagaatttcaatatc  TA-rich tract