1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcaacttggactgggttgattttttttctttttcctcctttgctttattaatcctaatttacgatacttattatagctttgctttatatcgggtaacagGCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGAAGTCATCATCTTGGCATTGATGACACTAGGAACATAGCAAGAGTACTGC
species | Glycine max |
transcript | GLYMA06G35090.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTGGATTAATCTCAAAGATGTCTATCTGAACTTTTATGATAGGAGG GCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGAEST: gi|10252655|gb|BE820421.1|BE820421
genomic: TGGAGTGGATTAATCTCAAAGATGTCTATCTGAACTTTTATGATAGGAGGgtgagatctt ... cgggtaacagGCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGA
EST: TGGAGTGGATTAATCTCAAAGATGTCTATCTGAACTTTTATGATAGGAGG GCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGA
genomic: TGGAGTGGATTAATCTCAAAGATGTCTATCTGAACTTTTATGATAGGAGGgtgagatctt ... cgggtaacagGCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGA
ttattaatcctaatttacgatacttattatagctttgctttatatcgggtaacagGCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGAAGTCATCATCTTGGCATTGATGACACTAGGAACATAGCAAGAGTACTGC
tcctaat putative branch site (score: 2)
taatttacgatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaacttggactgggttgattttttttctttttcctcctttgctttattaatcctaatttacgatacttattatagctttgctttatatcgggtaacagGCCACAGGAATGGTTACAATGATGAAGGAACTACAAATACCAATGGTGGGAAGTCATCATCTTGGCATTGATGACACTAGGAACATAGCAAGAGTACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - -cttggac
- - - - - - tgggttg
- - - - - - - - - - - - - - - - ttcctcc
- - - - - - - - - - - - - - - - - - - - -tgcttta