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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagaaattttcttgacttccatcaatctcttaaagaaaataaaaattaagtataatagtttatttttatgctaaatttatcaataattttcaatttgtatgttaatttagttctcttgtagGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATCAG

Basic information

species Glycine max
transcript GLYMA06G25880.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342073|gb|CO983339.1|CO983339
EST:     TGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAG                         GTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATC
genomic: TGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGgtgaaagaaa ... tctcttgtagGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATC
EST: gi|120532442|gb|EH260575.1|EH260575
EST:     TGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAG                         GTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATC
genomic: TGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGgtgaaagaaa ... tctcttgtagGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgctaaatttatcaataattttcaatttgtatgttaatttagttctcttgtagGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATCAG
                                            ttctcttgt  CT-rich tract
     taaatttatcaataat  TA-rich tract