1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcctgcaatccttttaatgccgaagaaaaataccacttttcaatcttttctcccttccctgtgtttagtgaagatagttacatacatgtgtttagtgaagatagttacattggtagttatggggaatgtttgtctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGA
species | Glycine max |
transcript | GLYMA06G23570.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|254332296|gb|GR846341.1|GR846341
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|192311177|gb|FK004488.1|FK004488
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|254334773|gb|GR844558.1|GR844558
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|42723184|gb|CK769083.1|CK769083
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|254334772|gb|GR844557.1|GR844557
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|254332297|gb|GR846342.1|GR846342
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: TCCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATEST: gi|151403536|gb|EV273346.1|EV273346
genomic: T-CCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
EST: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAG GCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
genomic: CTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGgtatgcctgc ... tctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGAT
gtgtttagtgaagatagttacattggtagttatggggaatgtttgtctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGA
tttgtctc CT-rich tract
atagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctgcaatccttttaatgccgaagaaaaataccacttttcaatcttttctcccttccctgtgtttagtgaagatagttacatacatgtgtttagtgaagatagttacattggtagttatggggaatgtttgtctcgttcagGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT