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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataacttttgtctataattgtatatcaggatattagaactttgaaatttgttaagttgatttatgtatttattagattatcaatatataaataaataataaatttatttaatgttcttttcactgatttggtgtgttatgcgtgtcagGTGTATGCTGCACAATTTTGCAGGAAACATTGAGATGTATGGGATATTAGACGCAATAGCATCTGGCCCAATTGATGCACGCACAAGTAATAACTCAACA

Basic information

species Glycine max
transcript GLYMA06G19800.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G19800.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv17s0000g07680.t01 (Vitis vinifera), 3'ss of exon 14
-------------------------------------gttataacttttgtctataattgtatatcaggatattagaactttga--aatttgttaagttgatttatgta--tttattag----attatcaatatataaataaataataaatttatttaatgtt-cttttcac-tgatttggtg-tgttatgcgtgtcagGTGTATGCTGCACAATTTTGCAGGAAACATTGAGATGTATGGGATATTAGACGCAATAGCATCTGGCCCAATTGATGCACGCACAAGTAATAACTCAACA
                                      || | |   ||||   | ||| |||||  | || |    | |||||  ||||  | ||  | ||  |||||  || || ||    || |    | |     |   |    | ||| |||  | |  ||||| |  ||||||  || |||||||| |  |||||| ||||||||||||||||| || || ||||||||||||||||| ||||| ||| |||||||||| |||                              
gttgtgtacctacatgcaaggttcatggagaaatccacttttcaaacttgttatttattctatat--gcatgtacatattttgatcaattactgaatctaataaatgtaagttcataagccacatgaaagttctgcttttttttttccattttttttcctctcgctttttatgtgatttattggtgttatgctttacagGTGCATGCTGCACAATTTTGCTGGGAATATTGAGATGTATGGGATTTTAGATGCAGTAGCATCTGGTCCA------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataataaatttatttaatgttcttttcactgatttggtgtgttatgcgtgtcagGTGTATGCTGCACAATTTTGCAGGAAACATTGAGATGTATGGGATATTAGACGCAATAGCATCTGGCCCAATTGATGCACGCACAAGTAATAACTCAACA
                           cactgat  putative branch site (score: 3)
     taaatttatttaatgt  TA-rich tract