1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttctttcttgtcactaattatctttgaactttatcctgtgctcttctccatataccactttgcaatggcattgattctctgttgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTT
species | Glycine max |
transcript | GLYMA06G17930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|254329001|gb|GR833373.1|GR833373
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|254343730|gb|GR857486.1|GR857486
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|9259946|gb|BE348093.1|BE348093
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAACTGCAGTGAAGGCATCTACAAAANAAAAAGAGT CTGGGAAATCATTCTGT-CTGGTGGATGGGAAACCATGGEST: gi|57575395|gb|CX548370.1|CX548370
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCAT-CTGTTCTGTTGGATGTGAAACCATGG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|213617811|gb|DB959395.1|DB959395
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|298194444|gb|HO041092.1|HO041092
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNN-GAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|57575104|gb|CX548079.1|CX548079
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|254329000|gb|GR833372.1|GR833372
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|13790786|gb|BG653377.1|BG653377
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|254343731|gb|GR857487.1|GR857487
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|7232756|gb|AW568109.1|AW568109
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAGAAAGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|151403128|gb|EV272938.1|EV272938
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAGAAAGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|208112180|gb|GD912851.1|GD912851
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: ATCT-CAAANAAAAAAGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGEST: gi|192296995|gb|FG990296.1|FG990296
genomic: ATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
EST: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACNNNNNNNNNNGAGT CTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
genomic: AGCAGAGGAACGGGCAGCTGCAGTGAAGGCATCTACAAAAAAAAAAGAGTgtaagtttct ... cccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTG
cttctccatataccactttgcaatggcattgattctctgttgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTT
tgttgat putative branch site (score: 4)
ttctctgttgattccc CT-rich tract
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctttcttgtcactaattatctttgaactttatcctgtgctcttctccatataccactttgcaatggcattgattctctgttgattcccttttcagCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGATGGAAGGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG