1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcctaaggacacatattagcaagattttttttgtttgtttagtaattaggaatttgggaggatgattaatttatttaaaattattccttctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAACTAGTTTTGACAAGAA
species | Glycine max |
transcript | GLYMA06G17330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTEST: gi|19346482|gb|BM891362.1|BM891362
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACT
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|22928921|gb|BU546060.1|BU546060
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCANNNGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|31307866|gb|CD393069.1|CD393069
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|208194412|gb|GD992511.1|GD992511
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|192331995|gb|FK024525.1|FK024525
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|51341831|gb|CO983148.1|CO983148
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|31468865|gb|CD410893.1|CD410893
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCEST: gi|192332010|gb|FK024526.1|FK024526
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
EST: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAG CAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
genomic: CTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGgtaaaacttt ... tctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTC
aattaggaatttgggaggatgattaatttatttaaaattattccttctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAACTAGTTTTGACAAGAA
gattaat putative branch site (score: 3)
ttattccttctctttc putative PPT
atgattaatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcctaaggacacatattagcaagattttttttgtttgtttagtaattaggaatttgggaggatgattaatttatttaaaattattccttctctttcagCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAACTAGTTTTGACAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - acacata
- - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggagga