1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tataaatactgtatagtttacctttactcaagaaaacaataatgaatactgtgactcctggaatactattattaaactgagctgctcctgctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGTTCATCTGCATTGGTAGGTTCACGGCTGTAACGTTCCAAGTCCTTGGTC
species | Glycine max |
transcript | GLYMA06G15280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACG TTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGEST: gi|4313494|gb|AI460613.1|AI460613
genomic: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACGgtaagtttct ... ctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAG
EST: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACG TTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGEST: gi|14990478|gb|BI316151.1|BI316151
genomic: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACGgtaagtttct ... ctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAG
EST: GGTTGACGGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACA TTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGEST: gi|8284386|gb|BE021945.1|BE021945
genomic: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACGgtaagtttct ... ctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAG
EST: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACG TTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAG
genomic: GGTTGACTGGCAAACGAGTTGATGCCTACGGCTATGGTTTGACATCCACGgtaagtttct ... ctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAG
atactgtgactcctggaatactattattaaactgagctgctcctgctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGTTCATCTGCATTGGTAGGTTCACGGCTGTAACGTTCCAAGTCCTTGGTC
ctcctgct CT-rich tract
aatactattattaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaatactgtatagtttacctttactcaagaaaacaataatgaatactgtgactcctggaatactattattaaactgagctgctcctgctgtctgcagTTGTTCATCATTCTGTCTTGCACTATCGCAGTAGGGACAAACCTCAGCCAGTTCATCTGCATTGGTAGGTTCACGGCTGTAACGTTCCAAGTCCTTGGTC
- - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgga