1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttgtttttattgcaatgttccactctttcccactttttgcatatgatggataacagcataaatatttggatttatcttgtttattgttttattactagGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCG
species | Glycine max |
transcript | GLYMA06G15200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAG GCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGEST: gi|308099193|gb|HO761426.1|HO761426
genomic: AAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAGgtaaattcaa ... ttattactagGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTG
EST: AAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAG GCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTG
genomic: AAGCTGATATGCTTGACCGAAAAGTTTCACTATTGAGTGGCGGTGAGAAGgtaaattcaa ... ttattactagGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTG
tgatggataacagcataaatatttggatttatcttgtttattgttttattactagGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCG
ggataac putative branch site (score: 3)
ttgtttt putative PPT
ataaatatttggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtttttattgcaatgttccactctttcccactttttgcatatgatggataacagcataaatatttggatttatcttgtttattgttttattactagGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
gcttgtt
- - - - - - tgcaatg
- - - - - - - - - -ttccact
- - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - -tgcatat