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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacataaataatcctcatagctcagagtatcattaacattttttcattgtatgcctacttataaccagaagggatcttgatgagtcatttataccttcgcatgcagATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAAGTTCACAGCTATGCACAGAGTAAGGGAATCAGCATAATGGGAGACATGC

Basic information

species Glycine max
transcript GLYMA06G15140.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15140.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g43390.1 (Oryza sativa), 3'ss of exon 6
gtaagaacataaataatcctcatagctcagagtatca--ttaacattttttcattgtatgcctacttataaccagaagggatcttgatgag-tcattta--taccttcgcatgcagATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAAGTTCACAGCTATGCACAGAGTAAGGGAATCAGCATAATGGGAGACATGC
                          | ||  | |||   ||  || |||||||||   |   | |||| ||   ||   ||     ||   |||| ||  || |||   ||||||||| |  ||||||| || ||||| ||||| ||||||||||||||||||  | |||  |  |||||| |||    ||| |||||||||||||| |||||||
-------------------------gtaagcatttcaaactataatattttcattgc--gatgaattattacagaaacaaatgccagtggactcatctacttaacttgctatgcagATAGAGATATTTATGGCTCAACAATTCTTATTTCAAAGGCAGTGGCAGCGAATTCGTAAATATGCAAAGAAGTTGGGTATCAGCATAATGGGTGACATGC

upper sequence: GLYMA06G15140.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 6
gtaagaacataaataatcctcatagctcagagtatcattaacattttttcattgtatgcctacttataaccagaagggatcttgatgagtcatttataccttcgcatgcagATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAAGTTCACAGCTATGCACAGAGTAAGGGAATCAGCATAATGGGAGACATGC
            |  |||    |  |||  ||   |||      ||| |   |  ||   | || |||   || |    |  || | |    |||  || |     | ||||||||  |||| ||||||||||| ||||| || |||||||| |||||||||||||  | |||||| ||||  || |||||||  ||||||||||||||||
----------gtaagatctggctgactcctag-gccata-----tttatgggtccataatttctcatagggagtatatgtaatgctcaag-gttttcactt----gtacagATAAACATATTCATTGCCCAACAATTCTTATTCCAAAGGCAATGGCAGAAAGTTCGTAACTATGCGCAGATGAAAGGAATCAAGATAATGGGAGACATGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196160|gb|HO044551.1|HO044551
EST:     GTAGCTCTAGAAGATATTTACCAACAAAAGCGAGATTTT                         ATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAA
genomic: GTAGCTCTAGAAGATATTTACCAACAAAAGCGAGATTTTgtaagaacat ... tcgcatgcagATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcctacttataaccagaagggatcttgatgagtcatttataccttcgcatgcagATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAAGTTCACAGCTATGCACAGAGTAAGGGAATCAGCATAATGGGAGACATGC
                                        taccttc  CT-rich tract
                                 tcatttata  TA-rich tract