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...tgttatagcttttttttatcaaatcaaccatagttgttgaaggtattttgtttcatattttgcacacaccataaagcttagtttttatttccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
species | Glycine max |
transcript | GLYMA06G14060.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193388580|gb|FK357469.1|FK357469
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193358175|gb|FK322757.1|FK322757
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCAATTCTGAATTTCGAG TTATTGTTCGCGGGCTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|14011762|gb|BG726684.1|BG726684
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCC-ATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208329235|gb|GE131233.1|GE131233
genomic: GTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193672715|gb|FK619799.1|FK619799
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207718222|gb|GD698814.1|GD698814
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207809663|gb|GD782339.1|GD782339
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207718815|gb|GD700163.1|GD700163
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208148031|gb|GD949688.1|GD949688
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208152909|gb|GD945268.1|GD945268
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207703994|gb|GD684962.1|GD684962
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193443241|gb|FK405249.1|FK405249
genomic: CTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207769839|gb|GD742153.1|GD742153
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCTATTCTTCTACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|31468970|gb|CD410998.1|CD410998
genomic: GGCGGGGGTCGTTTTGGC-A-TC-TC-ACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CGGC-CAGGC-GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGEST: gi|207749123|gb|GD720527.1|GD720527
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193661822|gb|FK605240.1|FK605240
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193558135|gb|FK512434.1|FK512434
genomic: GGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGTGGACTCCCATCTTEST: gi|208305633|gb|GE109074.1|GE109074
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTT
EST: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208095348|gb|GD892064.1|GD892064
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208107067|gb|GD902908.1|GD902908
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193393546|gb|FK360644.1|FK360644
genomic: CGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATACTTACTGCATCTTGGCAAGATTTGAAGEST: gi|193702518|gb|FK635184.1|FK635184
genomic: GGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCAT-CTT-CTGCATCTTGGCAAGATTTGAAG
EST: CCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193576540|gb|FK533679.1|FK533679
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GCAGGC-GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208276146|gb|GE074328.1|GE074328
genomic: GCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208307858|gb|GE105422.1|GE105422
genomic: CGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208068554|gb|GD862736.1|GD862736
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGG-CGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208234156|gb|GE031015.1|GE031015
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATCGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193379789|gb|FK345347.1|FK345347
genomic: GTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193414754|gb|FK381394.1|FK381394
genomic: GGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGGGTCGTTTTGGTCTATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193466946|gb|FK430337.1|FK430337
genomic: GGGGTCGTTTTGG-C-ATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208089216|gb|GD887051.1|GD887051
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208198398|gb|GD997589.1|GD997589
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|208049046|gb|GD845429.1|GD845429
genomic: GGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTGGCTATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207717122|gb|GD697616.1|GD697616
genomic: GGCGGGGGTCGTTTTGGC-ATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GGCGGGGGTCGTTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|207713685|gb|GD695360.1|GD695360
genomic: GGCGGGGGTCG-TTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193589473|gb|FK544189.1|FK544189
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193553739|gb|FK509074.1|FK509074
genomic: GTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: CCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCCATCTTCTGCATCTTGGCAAGATTTGAAGEST: gi|193717067|gb|FK654695.1|FK654695
genomic: CCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACT-CCCATCTTCTGCATCTTGGCAAGATTTGAAG
EST: GCGGGGG-CGTTTTGGCATCTCACGCCATTCTGAATTTCGAG TTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
genomic: GCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGgtgggtccat ... ccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
ttttgtttcatattttgcacacaccataaagcttagtttttatttccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
tttttatttccatct CT-rich tract
ttagtttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttatagcttttttttatcaaatcaaccatagttgttgaaggtattttgtttcatattttgcacacaccataaagcttagtttttatttccatctacagTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG