1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagaaacgattactatttgtttatgatacgtgctttcttcttaattatggtggattgtgttatgaaattgacaccttgttcttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG
species | Glycine max |
transcript | GLYMA06G14050.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATEST: gi|193542464|gb|FK497570.1|FK497570
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|207681195|gb|GD661942.1|GD661942
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|208297539|gb|GE092810.1|GE092810
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCCCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTGTGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|193387164|gb|FK352959.1|FK352959
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|208149690|gb|GD947694.1|GD947694
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|193378815|gb|FK345156.1|FK345156
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|208284307|gb|GE083707.1|GE083707
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|193607198|gb|FK560079.1|FK560079
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATEST: gi|151397590|gb|EV267463.1|EV267463
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTAT
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|21677144|gb|BQ629495.1|BQ629495
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|208291734|gb|GE090630.1|GE090630
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCGGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|15661924|gb|BI699295.1|BI699295
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCEST: gi|254343883|gb|GR857639.1|GR857639
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
EST: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAG GTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
genomic: GTTACTGAAGAGCAGCTGGCAGCTCTCTTTCTCAACTGCGGCCAGgtagaaacga ... ttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCC
cttcttaattatggtggattgtgttatgaaattgacaccttgttcttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG
aattgac putative branch site (score: 3)
ccttgttctt CT-rich tract
ttatgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaacgattactatttgtttatgatacgtgctttcttcttaattatggtggattgtgttatgaaattgacaccttgttcttggctatagGTTGTTGATTGCCGTGTATGTGGAGATCCTAACTCTATTCTTCGATTTGCCTTCATTGAGTTCACAGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG