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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaatggttacggtgtgctcgcttttcttcttaataattgttgaccgtgttattgattgaatctactccactttcctgactatagGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAG

Basic information

species Glycine max
transcript GLYMA06G14030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14030.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0098g01040.t01 (Vitis vinifera), 3'ss of exon 4
--------gtagaa-atggttacggtgtgctcgcttttcttcttaataattgttgaccgtgttattgattgaatctactccactttcctgactatagGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAG
        ||     ||| ||   ||||  ||   ||| ||   |  ||| |   |  |||||  | | ||| | | ||      |  ||  |  |||||||||| || ||| | ||||| |||||||||||  ||||||| ||||||||| |||| ||||| || || |
gtaattcggtgtttcatgttttaagtgtattccggtttgtttggaccaatggagtattgtgtttgttaatga-tttcctttggcattttggttgaagGTTGTTGACTGTCGTATATGTGGTGATCCTAATTCCGTTCTCCGATTTGCCTTCGTTGAATTTACTGATGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990104|gb|BI315777.1|BI315777
EST:     GTTACTGAAGAGCAGTTGGCGGCACTCTTTCTTAACTGTGGCCAG                         GTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCC
genomic: GTTACTGAAGAGCAGTTGGCGGCACTCTTTCTTAACTGTGGCCAGgtagaaatgg ... ctgactatagGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaataattgttgaccgtgttattgattgaatctactccactttcctgactatagGTTGTTGATTGCCGTGTTTGTGGGGATCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAG
                                           tcctgac  putative branch site (score: 2)
                               tctactccactttcct  CT-rich tract
                   ttattgatt  TA-rich tract