1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctattcttccattatactcttctctttcctccctagtattctgattaaatctcacaccattttgctatatcttgtcttggtgttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATAT
species | Glycine max |
transcript | GLYMA06G13760.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACT TTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTEST: gi|193454901|gb|FK418234.1|FK418234
genomic: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTgtatgctatt ... gttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGT
EST: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACT TTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTEST: gi|193372311|gb|FK338328.1|FK338328
genomic: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTgtatgctatt ... gttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATT
EST: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTCTGACCACT TTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGT
genomic: TTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTgtatgctatt ... gttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGT
tattctgattaaatctcacaccattttgctatatcttgtcttggtgttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATAT
atctcac putative branch site (score: 3)
tgattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctattcttccattatactcttctctttcctccctagtattctgattaaatctcacaccattttgctatatcttgtcttggtgttggaacagTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT