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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcattatattcttcttaaatgattataatgcacaaattttctagtgactttatattaactttcatctcatcatgtatttatctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT

Basic information

species Glycine max
transcript GLYMA06G13720.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13720.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0060g01920.t01 (Vitis vinifera), 3'ss of exon 5
--gtactgtcattatattc-ttcttaaatgattataatgcacaaattttctagtgactttatattaactttcatctcatc-atgtatttatctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT
   || | |   | | ||| || ||  |     || |   | ||||  |  ||        | ||||  ||   || ||  ||  | ||   | ||  |||||||| ||||||||||| || || ||||||||||||||||| || ||||||||||| |||||||||||
gattagttttcctgttttcctttttgcaaaggcatgaaata-aaatagttgaggtttccctttttaatattttcctaatttattgaattgaataatgccagGCCATAATGGCTGAAGGAAAGCAACATGCTCTTGCTATTGGGTTCACAAAAATGTCAGCAAAAGACAT

upper sequence: GLYMA06G13720.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S215_25V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------gtactgtcattatattcttctt---aaatgattataatgcacaaattttctagtgactttatattaactttcatctcatcatgtat--ttatctgatt--------------tcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT
                          |   |  | || | || |||||   |||  |  || ||    |  | | |  |||     ||| | |  || ||   || ||  ||  ||  || ||               |||||| |||||||| ||||| ||| |||||||||| ||||| || |  || || |||||||||||||||||
gtgagctcagttacttatttttgtttgcttttcctttttctttttctttaaaaaaaaaaatcatagtaatgtatccgtgtgtggggataatcagctttattgtattataaatgattgactaatggtattattgttccatcagGCAATCATGGCAGAAGGCAAAGAGCATGCTCTGGCTATAGGATACACCAAGATGTCTGCAAAAGACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6848993|gb|AW351283.1|AW351283
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|193362779|gb|FK327871.1|FK327871
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298187707|gb|HO031664.1|HO031664
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCGATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|37997132|gb|CF808721.1|CF808721
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|37993894|gb|CF805640.1|CF805640
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|209712615|gb|BW653748.1|BW653748
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298164604|gb|HO014249.1|HO014249
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298192440|gb|HO036522.1|HO036522
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|151394068|gb|EV263939.1|EV263939
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|193448013|gb|FK411016.1|FK411016
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|298169962|gb|HO018586.1|HO018586
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|209712614|gb|BW653747.1|BW653747
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|193346957|gb|FK311366.1|FK311366
EST:     TGTAGGGGCAGAATTGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAA
genomic: TGTAGGGGCAGAA-TGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAA
EST: gi|193597105|gb|FK554433.1|FK554433
EST:     CGTCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|254323561|gb|GR836007.1|GR836007
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|151412868|gb|EV282680.1|EV282680
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAACATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|192300163|gb|FG989285.1|FG989285
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|254323562|gb|GR836008.1|GR836008
EST:     CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAA
EST: gi|193593811|gb|FK548405.1|FK548405
EST:     CGTCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTG                         GCCATCATGGCTGAAGGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAA
genomic: CATCTCCTGGGGGTGTTTTGGATGAGGATGTAGGGGCAGAATGCCCTGTGgtactgtcat ... ctgatttcagGCCATCATGGCTGAAGG-TAAACAGCATGCTCTTGCTATTGGCTTTACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctagtgactttatattaactttcatctcatcatgtatttatctgatttcagGCCATCATGGCTGAAGGTAAACAGCATGCTCTTGCTATTGGCTTTACAAAAATGTCTGCAAAAGACAT
                                        tttatct  CT-rich tract
            tttatattaactttca  TA-rich tract