1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atccactcattttgccaccctacttgtacatagtttcatatttattattgccagtgcagtggaatagactcagattcatcattcatgtatggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATTTCATATACCGAGACAATAAAGGTGTTCCAAGGAAGCAAGCCCCAACAG
species | Glycine max |
transcript | GLYMA06G12740.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATEST: gi|10253026|gb|BE820792.1|BE820792
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
EST: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATEST: gi|6964073|gb|AW432766.1|AW432766
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
EST: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCA GTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
genomic: GCACTTCCTGGTTTATCTTTGGTCTGCTAGGCCGTGACCCATTTGTTGCAgtaagtcact ... ggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTAT
tattgccagtgcagtggaatagactcagattcatcattcatgtatggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATTTCATATACCGAGACAATAAAGGTGTTCCAAGGAAGCAAGCCCCAACAG
ttttc CT-rich tract
attttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atccactcattttgccaccctacttgtacatagtttcatatttattattgccagtgcagtggaatagactcagattcatcattcatgtatggattttcagGTACCTAATGGTGTTGGTTCTGCTTTGGGGACAATGCAACTAATATTGTATTTCATATACCGAGACAATAAAGGTGTTCCAAGGAAGCAAGCCCCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- ccactca
- - - - - - tgccacc
- - - - - - - - - - - cttgtac
- - - - - - - - - - - - - - - - - - - - - - -tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat