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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcctaagcctcttggtttttcaattactttttattactttattctctttcaatttcatattttacttaaaattaatttgtattcacagATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCA

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12010.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g02440.t01 (Vitis vinifera), 3'ss of exon 7
---------------------------------------gtattgcctaagcctcttggtttttcaattactttttattactttattctctttcaatttcatattttact-taaaattaatttgtattcaca-gATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCA
                                          |    ||| ||| ||| |   |     |   |    |||  | ||  || |  ||  | ||| |      | | ||  ||||| ||  || | | |||  |||||| |||      |||||||||| |   ||||||||||||||||||||| |||| |||||| || | ||||||||||| | |||||| |
gtaaagaacctttcttagtcttgcatacttatggtgctatggtcatttaaccctgttgctacctgtggcataatgggctacccttttgcctctgtatggcttatgtgctgacatagtttttttgtgtttccaagGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319120|gb|GR828848.1|GR828848
EST:     AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAG                         ATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA
genomic: AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAGgtattgccta ... gtattcacagATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA
EST: gi|23725278|gb|BU760599.1|BU760599
EST:     TTGATTCCAATGTCGATTTGCAG                         ATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA
genomic: TTGATTCCAATGTCGATTTGCAGgtattgccta ... gtattcacagATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA
EST: gi|254324505|gb|GR833930.1|GR833930
EST:     AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAG                         ATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA
genomic: AGCTTGGAGGAAAATCTCCTGTTGTTGTTGATTCCAATGTCGATTTGCAGgtattgccta ... gtattcacagATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttattctctttcaatttcatattttacttaaaattaatttgtattcacagATAGCAGCTAGGCGAATAATTTCTGGCAAGTGGGGATTGAATAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCA
                                    aattaat  putative branch site (score: 3)
     ttattctctttcaatt  TA-rich tract