1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taatatgtatattatcccatctaaaagatgaaatgtatatatgggttgctacttaatggtaacaacattaacatgggtgatattgccattgtcattgcagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
species | Glycine max |
transcript | GLYMA06G11330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATTGGAGCGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCAEST: gi|24136962|gb|BU927472.1|BU927472
genomic: CAATTGGAGCGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccgg ... gtcattgcagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCA
EST: CAATTGGAGCGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAG TGCAACTTCCAACAGCAT
genomic: CAATTGGAGCGGGAGAAGGGAATTGTTATCAGATTCATGATTGGTCACAGgtaattccgg ... gtcattgcagTGCAACTTCCAACAGCAT
ttgctacttaatggtaacaacattaacatgggtgatattgccattgtcattgcagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
cattaac putative branch site (score: 2)
aacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatatgtatattatcccatctaaaagatgaaatgtatatatgggttgctacttaatggtaacaacattaacatgggtgatattgccattgtcattgcagTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - ccatcta
- - - - - - - - - - - - - - - - - - - - -tgggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgcc