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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactttagcttctctatatgaaaagttttatcaagaatactttatcacataaccatgctatatctaaacatcctgcatgttttcttcctgctctctgtctctctaattggcaaaacctaatttcgcaaatgctagGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTT

Basic information

species Glycine max
transcript GLYMA06G08780.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08780.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os06g22670.1 (Oryza sativa), 3'ss of exon 3
gtaagtactttagcttctctatatgaaaagttttatcaagaatactttatcacataaccatgctatatctaaacatcctgcatgttttcttcctgctctctgtctctctaattggcaaaacctaatttcgcaaatgctagGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTT
                                       |   | || ||          |  | |||  ||  |       | |||||   | | ||    | |   ||  |  | ||   |  | |   |  || ||||||||| |||||||||||||| ||  | ||||||||||||||| | |||  | | ||    ||  |||| |  |||||   ||| || ||||||||  ||
-------------------------------------ggggtgagttgatggatctggtttaatgtataaaataaggtcatttattttcaaacagttcatcatgtgaatagatcactaa---tggtgttttatctgttagGTACTGCGAGTGTTTTGCAGCAGGTCTTTATTGTGATGGCTGCCATTGTAAACAATGTGGAAACTATGTTGGGAATGAAAGTGCTAGGCAGGAGGCCATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttcctgctctctgtctctctaattggcaaaacctaatttcgcaaatgctagGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTT
                                  acctaat  putative branch site (score: 3)
                                     taattt  TA-rich tract