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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtgctttgtccttgacttttttgtcctcctttttaaccgatgttaatttaatgatcccaccttaacattttttactgcacttgtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAA

Basic information

species Glycine max
transcript GLYMA06G08670.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213618075|gb|DB963708.1|DB963708
EST:     CTGGTTCTTTAAGAGTTAGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAAC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAAC
EST: gi|5606173|gb|AI900271.1|AI900271
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|27808994|gb|CB063416.1|CB063416
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|17022063|gb|BM093097.1|BM093097
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|37997401|gb|CF808990.1|CF808990
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151408997|gb|EV278805.1|EV278805
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|213587077|gb|DB961772.1|DB961772
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151394218|gb|EV264089.1|EV264089
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|6454608|gb|AW185291.1|AW185291
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCCGA-GGTTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCC-GAAGGTTTT
EST: gi|9986765|gb|BE660873.1|BE660873
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151395018|gb|EV264889.1|EV264889
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|213588877|gb|DB967957.1|DB967957
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|16996361|gb|BM085733.1|BM085733
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|254323227|gb|GR840032.1|GR840032
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|24135997|gb|BU926507.1|BU926507
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|193718709|gb|FK649515.1|FK649515
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCA
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCA
EST: gi|7686676|gb|AW757333.1|AW757333
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|298196933|gb|HO041676.1|HO041676
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATC
EST: gi|209723439|gb|BW682393.1|BW682393
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTT
EST: gi|24205360|gb|BU964613.1|BU964613
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACCTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|298196196|gb|HO044587.1|HO044587
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|7925748|gb|AW831774.1|AW831774
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CCGACTATATACTTGCCCACACCCAACTTGGG-CAATCACCCCAAGGGTTT
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACC-AACTTGGGGCAATCACCCGAAGGTTTT
EST: gi|298174108|gb|HO017444.1|HO017444
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCCACACCAACTTGGGG
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGG
EST: gi|209719273|gb|BW679815.1|BW679815
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|151411675|gb|EV281486.1|EV281486
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTT-GGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|209714938|gb|BW650784.1|BW650784
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
EST: gi|18690845|gb|BM519693.1|BM519693
EST:     CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAA                         CGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC
genomic: CTGGTTCTTTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAAgtaaagtgct ... gtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgatgttaatttaatgatcccaccttaacattttttactgcacttgtcaattcagCGGACTATATACTTGCCAACACCAACTTGGGGCAATCACCCGAAGGTTTTCAACTTAGCAGGCTTGTCTGTCAAAACATACCGCTACTATGCTCCAGCAA
                      ccttaac  putative branch site (score: 3)
                        ttaacattttttact  TA-rich tract