1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatagtggattgtttttatatatgtccatgtgggttttattcatggatttgataactaagcagaaacattcctttcaatgcattttaatggtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTT
species | Glycine max |
transcript | GLYMA06G08480.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|193358158|gb|FK319730.1|FK319730
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAAEST: gi|208265222|gb|GE065018.1|GE065018
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|193661905|gb|FK606051.1|FK606051
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCGGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|193553037|gb|FK507448.1|FK507448
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTAATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|208200175|gb|GD996048.1|GD996048
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAAEST: gi|193609602|gb|FK564424.1|FK564424
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTAATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|298169434|gb|HO020794.1|HO020794
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTEST: gi|193546835|gb|FK501374.1|FK501374
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCT
EST: ATGCGTGCAGATCAGAAATTGGTTTAATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|208202898|gb|GD995300.1|GD995300
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAAEST: gi|193382442|gb|FK349027.1|FK349027
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAA
EST: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATT GTCTTTGAGAAG
genomic: ATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTgtaagtatat ... gtgttatcagGTCTTTGAGAAG
gatttgataactaagcagaaacattcctttcaatgcattttaatggtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTT
attttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagtggattgtttttatatatgtccatgtgggttttattcatggatttgataactaagcagaaacattcctttcaatgcattttaatggtgttatcagGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT