Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattatttctaaatttatcattgctagcctgttagctttttccttgggatgcatggcttttgtttgtaaagctatggttacttgatttgtcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG

Basic information

species Glycine max
transcript GLYMA06G08260.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08260.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g02850.t01 (Vitis vinifera), 3'ss of exon 5
ttattatttctaaatttatcattgc-tagcctgttagctttttccttgggatgcatggcttttgtttgtaaagctatggttacttgatttgtctttt----gcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG
      ||  |  ||||||  |    | || | |     | | | ||   ||   || ||    ||    | |||   |     | |   | | |||     |||| ||||| |||| |||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||
---cagttcttttatttattgtactatggcatttgcaactctactttcatatttttgcctgaaattct--atgcttcagcctaataacaagccctttcatcacagGTTCTGGCTCCACTTACTTGTATGGATTTTTTGACCAAGCATGGAAAGAGGGAATGACTAAGGATGAAGCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196281|gb|HO044672.1|HO044672
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|192293857|gb|FG986066.1|FG986066
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|207730657|gb|GD706956.1|GD706956
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|254326872|gb|GR836481.1|GR836481
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|151403047|gb|EV272860.1|EV272860
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|120529083|gb|EH257217.1|EH257217
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|151400109|gb|EV269923.1|EV269923
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|7587840|gb|AW703648.1|AW703648
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGNGTCCAGTTACTTGTATGGTTTCTTTGAC
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGAC
EST: gi|193673163|gb|FK615021.1|FK615021
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|151393354|gb|EV263229.1|EV263229
EST:     TGGAGTTCCTCTGGGTGGAACAACAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|151405592|gb|EV275406.1|EV275406
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193464898|gb|FK432378.1|FK432378
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|298163452|gb|HO012185.1|HO012185
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCC
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCC
EST: gi|31463156|gb|CD405184.1|CD405184
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|7030215|gb|AW459998.1|AW459998
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|192327794|gb|FK022073.1|FK022073
EST:     TGGTGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|27424900|gb|CA936420.1|CA936420
EST:     TGGAGTTCCTCTGGGTGGAACCATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAAG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|5605707|gb|AI899868.1|AI899868
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTTGTATTGGTTTCTTTGACCAAGCCTGGAAAGA
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTT-GTAT-GGTTTCTTTGACCAAGCCTGGAAAGA
EST: gi|15337215|gb|BI497871.1|BI497871
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|13478110|gb|BG507722.1|BG507722
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGNTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|16997060|gb|BM086432.1|BM086432
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|192333616|gb|FK025433.1|FK025433
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193551144|gb|FK506067.1|FK506067
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|254321190|gb|GR827639.1|GR827639
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|27427298|gb|CA938818.1|CA938818
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAAG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|192333615|gb|FK025432.1|FK025432
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|10231723|gb|BE800611.1|BE800611
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAATTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|15815710|gb|BI787985.1|BI787985
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGGTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|208146331|gb|GD946210.1|GD946210
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|254321189|gb|GR827638.1|GR827638
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|31456680|gb|CD398708.1|CD398708
EST:     CAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: CAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|21600722|gb|BQ611053.1|BQ611053
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193327659|gb|FK297362.1|FK297362
EST:     TGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|58017005|gb|CX703747.1|CX703747
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|120494878|gb|EH223045.1|EH223045
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|24205242|gb|BU964495.1|BU964495
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|192332116|gb|FK026368.1|FK026368
EST:     GGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: GGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|298198461|gb|HO040000.1|HO040000
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCT
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCT
EST: gi|16105248|gb|BI892988.1|BI892988
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGCAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|207704098|gb|GD684548.1|GD684548
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|208029665|gb|GD832043.1|GD832043
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|254326873|gb|GR836482.1|GR836482
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|57575063|gb|CX548038.1|CX548038
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|298191590|gb|HO039069.1|HO039069
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCT
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCT
EST: gi|14516464|gb|BI095136.1|BI095136
EST:     CTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: CTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|31457184|gb|CD399212.1|CD399212
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|10237932|gb|BE806820.1|BE806820
EST:     TGGAGTTTCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTC
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTC
EST: gi|192310604|gb|FG999249.1|FG999249
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|6455701|gb|AW186384.1|AW186384
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193589876|gb|FK545240.1|FK545240
EST:     TGGAG-TCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|9899223|gb|BE608121.1|BE608121
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|5688240|gb|AI941255.1|AI941255
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193448216|gb|FK416399.1|FK416399
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCTAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCC-AGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAG
EST: gi|192330043|gb|FK020859.1|FK020859
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|7639793|gb|AW734108.1|AW734108
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|298195881|gb|HO044272.1|HO044272
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GGA-CTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGC
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagG-ATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGC
EST: gi|192310605|gb|FG999250.1|FG999250
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193665886|gb|FK611273.1|FK611273
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|13480102|gb|BG509435.1|BG509435
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193674587|gb|FK619989.1|FK619989
EST:     AGGAG-TCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: -GGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|13478005|gb|BG507655.1|BG507655
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGGATGGCTTCTT
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTT
EST: gi|19053309|gb|BM731976.1|BM731976
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|17519481|gb|BM188523.1|BM188523
EST:     GAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: GAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|19347226|gb|BM892106.1|BM892106
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193477231|gb|FK439658.1|FK439658
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|193693179|gb|FK633756.1|FK633756
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
EST: gi|37995371|gb|CF806960.1|CF806960
EST:     TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAG                         GATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG
genomic: TGGAGTTCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATCGGAGgtatctcatt ... tcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggatgcatggcttttgtttgtaaagctatggttacttgatttgtcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG
                                   acttgat  putative branch site (score: 5)
                                         tttgtctttt  CT-rich tract
             ttttgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattatttctaaatttatcattgctagcctgttagctttttccttgggatgcatggcttttgtttgtaaagctatggttacttgatttgtcttttgcagGATCTGGGTCCAGTTACTTGTATGGTTTCTTTGACCAAGCCTGGAAAGAGGGAATGACCAAGGATGAAGCCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - agcctgt
- - - - - - - - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - -ggatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg