1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aacttctactttttaggttgtgaatggattaattaggtctagctgtgttccccccccccccccaaaatttatatttctgaatatcactggtttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTA
species | Glycine max |
transcript | GLYMA06G08230.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTEST: gi|8283180|gb|BE020741.1|BE020741
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG AAAGGGGATGATCTTGGGAGGTTCANGCAACTGGATGAGATATTGTTTATTEST: gi|151395314|gb|EV265185.1|EV265185
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTEST: gi|192305677|gb|FG994359.1|FG994359
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
EST: TTGATCCTGTTTTTATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAG AAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
genomic: TTGATCCTGTTTTCATCATGTTGCCTATATTTGAGGAAGCTAGAATGAAGgtaattattt ... tttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATT
tgttccccccccccccccaaaatttatatttctgaatatcactggtttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTA
tttcttgc CT-rich tract
aaaatttatatttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttctactttttaggttgtgaatggattaattaggtctagctgtgttccccccccccccccaaaatttatatttctgaatatcactggtttcttgcagAAAGGGGATGATCTTGGGAGGTTCAGGCAACTGGATGAGATATTGTTTATTGATGGGTATCCAGGATATATGCAGTTGATGTCTGTTGTGGAGAACTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA