Sequence
atgc intronic sequence ATGC exonic sequencegtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcagGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCT
Basic information
species | Glycine max |
transcript | GLYMA06G07930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G07930.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G31080.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcagGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCT
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---------------------------------------------------------gtgaatgaatgtttaagca-------aatcctttacc-tgaatctttcaactatatacttatttc--taacataattt----tgcaatatgctt-tgtaaatgcagGACTTGCTCGGAAAGAGGATTTTGCTTACATTACATACTATTGCCCTCACTGTAATGCTCTGAACAAACCGAAGCATTCAGAGGAGAATGTACTTCTTCC
upper sequence: GLYMA06G07930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0215g00090.t01 (Vitis vinifera), 3'ss of exon 5
gtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctatttt-gtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcagGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCT
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--------------------------------------------------------tgaag-tagttat----gtcctgtcttcgtttttgttaattttgttttttgaagagttgagtaccactactgaagta-gttttgtcctgtct--ttgtttttgtgcagGACTTGCCCGGAAGGAGGATTTCCCATATGTAACTTATTACTGCCCACACTGTCATGCCCTGAATCAATCAAAGCAAGCAGAAGAGCATGCTTCTCGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcagGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCT
ttcttatctgcttatt CT-rich tract
taaaaaaatgtgtatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagggggctagatttgatcttttatgatcatgtccttttgcatttattgcagaataaagatgattgtacaagtgctattttgtttttttacaatagaccatgttaatagatgaatacaacagtaaaaaaatgtgtattcttatctgcttattttctttcagGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTACTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCT
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