Sequence
atgc intronic sequence ATGC exonic sequencegttagaatgccaagtcacactctcaagatcatattttgcattatgagttgtttatagtactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC
Basic information
species | Glycine max |
transcript | GLYMA06G07380.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G07380.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g05090.t01 (Vitis vinifera), 3'ss of exon 6
gttagaatgccaagtcacactctcaagatcatattttgcattatgagttgtttatagtactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC
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----------ataggtaaatgctaaggat-gggccatat-ttagggatggcttgttaccaaattatgatgattttcataaaatactaagtgcaagtcatggcattgtttcagATGAGTCACCCAGGCTAAAGCATGATGGACCTGGCCTTCTGTCTATGTCAGTTGCCGATCGGGACACTGTTGGTTCTCAATTTATTGTCACCTTCAGTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51338391|gb|CO982257.1|CO982257EST: GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAG ATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA
genomic: GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAGgttagaatgc ... tttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC
aattaat putative branch site (score: 3)
tttgtttt putative PPT
tattttataattaatg TA-rich tract