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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatattaaaagatgtgcttttactaatttatattttgcatgagctttgcaccaatcttagtttaaaaagaagtaatgcagGTCTTAATAGTGCTGATCAGTACACGTAAATGGAGGAAAACTCGAGAACCAATCCCTTACTGTACTCTGTTAGTATGTCTCTGCGGTCAATCATGGTGCA

Basic information

species Glycine max
transcript GLYMA06G06890.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193583821|gb|FK543805.1|FK543805
EST:     TGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAG                         GTCTTAATAGTGCTGATCAGTACACGT
genomic: TGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGgtattcatat ... agtaatgcagGTCTTAATAGTGCTGATCAGTACACGT
EST: gi|298195893|gb|HO044284.1|HO044284
EST:     TGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAG                         GTCTTAATAGTGCTGATCAGTACACGTAAATGGAGGAAAACTCGAGAACCA
genomic: TGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGgtattcatat ... agtaatgcagGTCTTAATAGTGCTGATCAGTACACGTAAATGGAGGAAAACTCGAGAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatattttgcatgagctttgcaccaatcttagtttaaaaagaagtaatgcagGTCTTAATAGTGCTGATCAGTACACGTAAATGGAGGAAAACTCGAGAACCAATCCCTTACTGTACTCTGTTAGTATGTCTCTGCGGTCAATCATGGTGCA
 tactaat  putative branch site (score: 1)
                           aatcttagtttaaaaa  TA-rich tract