1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caagtcccatgctcccatgccatataactatgaaccagaatgtttatttacgttgattgttgggttctgcctcagtcattgcaagtgttgattttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATAATAGACCTACACGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAA
species | Glycine max |
transcript | GLYMA06G06030.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATEST: gi|213602396|gb|DB981051.1|DB981051
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATEST: gi|23727551|gb|BU761810.1|BU761810
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAEST: gi|117557816|gb|EG702201.1|EG702201
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGA
EST: CATATGAAGGTTGCTCATGGGAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATEST: gi|214009325|gb|DB990615.1|DB990615
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATEST: gi|151409164|gb|EV278972.1|EV278972
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATEST: gi|6964547|gb|AW433240.1|AW433240
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
EST: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAG AAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
genomic: CATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGgtttgttgtt ... attttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGAT
atttacgttgattgttgggttctgcctcagtcattgcaagtgttgattttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATAATAGACCTACACGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAA
tgttgat putative branch site (score: 4)
ttttttc CT-rich tract
ttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagtcccatgctcccatgccatataactatgaaccagaatgtttatttacgttgattgttgggttctgcctcagtcattgcaagtgttgattttttcagAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATAATAGACCTACACGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
caagtcc
- - - -catgctc
- - - - - - - -catgcca
- - - - - - - - - - - - - - tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaagt