Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaattttctatcatcattactctttctttctcatctttatgtgtcactgcgcttaattaatttaatgcttcctctaagtcctaattaacaaatgatatcgttgctcagTTACATTTCGAAGGTCAAAAGAATTTGGAAACATTCAAAAGCCATGCCGAAAGTTTCATATGCTCTGTCCTACCTGATAGTCCCTACCACCAGATTAAAT

Basic information

species Glycine max
transcript GLYMA06G05930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g02020.t01 (Vitis vinifera), 3'ss of exon 5
gtttaattttctatcatcattactctttctttctcatctttatgtgtcactgcgcttaattaatttaatgcttcctctaagtcctaattaacaaatgatatcgttgctcagTTACATTTCGAAGGTCAAAAGAATTTGGAAACATTCAAAAGCCATGCCGAAAGTTTCATATGCTCTGTCCTACCTGATAGTCCCTACCACCAGATTAAAT
|||  || || |    |||  |||  ||| ||   || |||      | |  |   |  ||| ||| ||  ||    ||| || |  ||      || | | |     |||||  |||| |||||  | |||   || || |||||||| | ||| || || ||||||||||| || || || |||||||| ||||||||||||||| |  
gttccatatt-tgcagtcacaactacttcatttggatttttgcaccccccaccaactt-ttatttttat-tttttaataattctttgttcttttgtggtgt-gaaatgcagTTTTATTTTGAAGGGGAGAAGGGCTTAGAGACATTCAAGAACCAAGCTGACAGTTTCATATGTTCAGTGCTTCCTGATAGCCCCTACCACCAGATTTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattaatttaatgcttcctctaagtcctaattaacaaatgatatcgttgctcagTTACATTTCGAAGGTCAAAAGAATTTGGAAACATTCAAAAGCCATGCCGAAAGTTTCATATGCTCTGTCCTACCTGATAGTCCCTACCACCAGATTAAAT
                             aattaac  putative branch site (score: 2)
                            taattaacaaatgata  TA-rich tract