1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacatagtatttttactgtgtagtacaaagtctttaatataacaatcaagtgctaactcaatattcatactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGCTTCATTAAGCCTTGTGCACGGGATATAG
species | Glycine max |
transcript | GLYMA06G05560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|213592624|gb|DB979415.1|DB979415
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTEST: gi|18734867|gb|BM528431.1|BM528431
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTT
EST: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCG GTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTA
genomic: AGCTGTTGGAGATGATAACTTGGGCCCAACTTGGAATCCATAAAAAACCGgtaacatagt ... tactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTA
gtacaaagtctttaatataacaatcaagtgctaactcaatattcatactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGCTTCATTAAGCCTTGTGCACGGGATATAG
tgctaac putative branch site (score: 1)
tttaatataacaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatagtatttttactgtgtagtacaaagtctttaatataacaatcaagtgctaactcaatattcatactgcacagGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGCTTCATTAAGCCTTGTGCACGGGATATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG