1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cccgtaaaaaattgtgatacttaaaaacagttgttactgtaatatgctaggacttgctgattcaaagtactgaagttcctggcatttgataatattgcagGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGACGAACACAAACTGGTCCATGGTAG
species | Glycine max |
transcript | GLYMA06G04350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAATTATGGAAATTCAGAAAAATCAA GTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGAEST: gi|16996369|gb|BM085741.1|BM085741
genomic: GCAGAAATTATGGAAATTCAGAAAAATCAAgtaagttggg ... aatattgcagGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGA
EST: GCAGAAATTATGGAAATTCAGAAAAATCAA GTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGA
genomic: GCAGAAATTATGGAAATTCAGAAAAATCAAgtaagttggg ... aatattgcagGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGA
gctaggacttgctgattcaaagtactgaagttcctggcatttgataatattgcagGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGACGAACACAAACTGGTCCATGGTAG
atttgataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccgtaaaaaattgtgatacttaaaaacagttgttactgtaatatgctaggacttgctgattcaaagtactgaagttcctggcatttgataatattgcagGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGACGAACACAAACTGGTCCATGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - -aaaaaat
- - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - tatgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatttg