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gtgagttaattattggttcttgttccaagtatactatactgtttacagaaaaatccaaggatctttgttcttgtgaataagattgaatttgtgacacatcttggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAATTTATGCATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTC
species | Glycine max |
transcript | GLYMA06G03970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTEST: gi|37996722|gb|CF808311.1|CF808311
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTEST: gi|37996920|gb|CF808509.1|CF808509
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: TCCGTCAGTTACTCCACCCCAACATTGTGCAGTATTATGGCAGTGAAATA GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTEST: gi|151399302|gb|EV269173.1|EV269173
genomic: TCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
EST: GCAGTATTATGGCAGTGAAATA GTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
genomic: GCAGTATTATGGCAGTGAAATAgtgagttaat ... tggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTT
aaggatctttgttcttgtgaataagattgaatttgtgacacatcttggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAATTTATGCATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTC
ttttc CT-rich tract
aataagattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttaattattggttcttgttccaagtatactatactgtttacagaaaaatccaaggatctttgttcttgtgaataagattgaatttgtgacacatcttggttttcagGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAATTTATGCATGAACATTGTGGAGCTATGACAGAGTCTGTGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT