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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaataaacaaattttctaagccccacccatttcttttgctaggggggtaggtgtgaattcttgattcagaaattacattgatctacacattgacatttgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAGGTGCAATTCTCTCTCTTAACACATATGCAGTGAT

Basic information

species Glycine max
transcript GLYMA06G02580.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G02580.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 3'ss of exon 5
gtatgaaataaacaaattttctaagccccacccatttcttttgctaggggggtaggtgtgaattcttgattcagaaattacattgatctacacattgacatttgttttcactttggtt--gaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAGGTGCAATTCTCTCTCTTAACACATATGCAGTGAT
||| | |  |       ||    ||         || ||| |  |       | || | | ||| ||  |  |    ||   || ||||           |||||| |  | |||  |   |||||||||||| | |  ||| |||||||||| ||||| || || || ||||| |||||||||||||||                                  
gtaaggatcatggccgcttaaccagtaaagaaatttccttcttgttttttttttgggggggatttttagtatacttgtt--cttaatct-----------tttgttctggccttgcctctaaagGGAGAAGAACTGAAGAAAGTGATTGGTGCGCCTGCCTATATTGAATGTAGCTCAAAAACACAGCAG----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561454|gb|CD487292.1|CD487292
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|298164350|gb|HO013995.1|HO013995
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|16348169|gb|BI973764.1|BI973764
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|19269284|gb|BM885540.1|BM885540
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|17021451|gb|BM092485.1|BM092485
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
EST: gi|19052868|gb|BM731535.1|BM731535
EST:     AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAG                         GGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT
genomic: AGCAATTTTTTATAGACCACCCTGGTGCAGTACCAATAACTACAACACAGgtatgaaata ... ttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcagaaattacattgatctacacattgacatttgttttcactttggttgaagGGAGAAGAATTAAGAAAACTGATTGGTGCTCCTGCTTACATCGAGTGTAGTTCAAAAACACAGCAGGTGCAATTCTCTCTCTTAACACATATGCAGTGAT
                         cattgac  putative branch site (score: 3)
                                 tttgttttcacttt  CT-rich tract
       aaattacatt  TA-rich tract