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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattcaaggatttctcccaaatttcttcaatgtatcccttgaaaatccaacgagtcttatgtgtgtgttttgtttggtgtccttcagATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGATGAGCTAGTTGATCCTTTAATTGATATTCAGCCCTATCCAAGATCTTTGA

Basic information

species Glycine max
transcript GLYMA06G01490.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 5
gtgattcaaggatttctcccaaatttcttca-atgtatcccttgaaaatccaacgagtcttatgtgtgtgttttgtttggtgtccttcagATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGATGAGCTAGTTGATCCTTTAATTGATATTCAGCCCTATCCAAGATCTTTGA
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gtgaaaacaagtttttttccatggttgtgtgcatcaatttcatacactgctactctgtcataacactat-tctcattgcctgggtttcagATGAACTTAGTTGATTGGTTTAAAGGAATGGTAGCTGGTCGTCGTGGAGAAGAGCTGGTGGACCCTTTGATTGAAGTTCAACCCTCTCCAAGAGCTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334813|gb|CO978679.1|CO978679
EST:     AGCTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAG                         ATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGAT
genomic: AGCTAATTACAGGAAGGAGTCCCATTGATTATTCTAGACCACCTGGAGAGgtgattcaag ... tgtccttcagATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcccttgaaaatccaacgagtcttatgtgtgtgttttgtttggtgtccttcagATGAACTTGGTTGATTGGTTTAAGGTAATGGTTGCAAGTCGTCGAGGCGATGAGCTAGTTGATCCTTTAATTGATATTCAGCCCTATCCAAGATCTTTGA
                                             tgtccttc  CT-rich tract
      ttgaaaat  TA-rich tract