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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctagtttcttgatgcatgctagtttttaatgagatgttttatacagATGATGCAGAATATGCTTTTGCAAGAGGGAGACACCGTAAGACTGAAATATGTATCACTTCCAAGGGGAACATTTGTTAAATTACAGCCCCAAACAAAGG

Basic information

species Glycine max
transcript GLYMA06G01000.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01000.1 (Glycine max), 3'ss of exon 5
lower sequence: AT4G38930.2 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------gtttctagtttcttgatgcatgctagtttttaatgagatgttt---tatacagATGATGCAGAATATGCTTTTGCAAGAGGGAGACACCGTAAGACTGAAATATGTATCACTTCCAAGGGGAACATTTGTTAAATTACAGCCCCAAACAAAGG
                               | | || | || |||   |  |   ||  |||    |||||   | | ||||||||||||||| |||| |||||||| |||||||  || ||| | | | ||||  | ||||||| |||||| |  || ||| | || ||||| ||||  |
gtaacaaacagtagcttgtttttatcaccaatacaagatactcgatatcttgtgacttaaaatcgattgtttgcttttgcagATGATGCAGAATTTGCTGTTGCAAGAAGGAGACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctagtttcttgatgcatgctagtttttaatgagatgttttatacagATGATGCAGAATATGCTTTTGCAAGAGGGAGACACCGTAAGACTGAAATATGTATCACTTCCAAGGGGAACATTTGTTAAATTACAGCCCCAAACAAAGG
                                ttttaat  putative branch site (score: 3)
                                    tttttaatgagatgtt  TA-rich tract