Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagcaggccctattctttgtagtaattgaacaatgacagttctttcttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG

Basic information

species Glycine max
transcript GLYMA05G37850.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os07g27790.1 (Oryza sativa), 3'ss of exon 5
--------------------cagcaggccctattctttgtagtaattgaacaatg---acagttctttcttgaccttta-gtggtgcaattacctgctttctgactata--tgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
                        | ||  || | ||||||  |||| |     |   |||  | |  ||| || |  | |  | |    ||     |||    ||  |  | | ||  |  | ||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||
gtagttttggccttagaccttgtaaagctttagtttttgtatgaattcagtgtcgcgtacatatttaacttaacttacaagaagggttcctataaattttaatgcttcagttttttttctttatagGGAAGGTACGAAATTATGAGGAATTACATGCCTAAAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os05g03820.2 (Oryza sativa), 3'ss of exon 5
--------------------cagcaggccctattctttgtagtaattgaacaatg---acagttctttcttgaccttt-agtggtgcaattacctgctttctgactatatgt-gttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
                        | ||  ||   ||| ||  |||| |    ||   |||  | |  ||| || |   ||  | |    ||     |||    ||  |  | |||  |  | ||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||
gtagttttggccttagaccttgtaaagctttagcttttctatgaattcagtgttgcctacatatttaacttaacttacgagaagggttcctataaattttaatgcttcagattgtttctttatagGGAAGGTACGAAATTATGAGGAATTACATGCCTAAAGTTGGCTCTCTTGGGCTTGATATGATGTTCCGAACATGCACTGTTCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G111579_T01 (Zea mays), 3'ss of exon 4
-cagc--aggccctattctttgtagtaattgaacaatgacagttctttcttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
    |  | | |  || || |  | |  || |   ||| |  ||      ||||  ||| || | ||  || |    |  |||  | |    ||| |    ||||||||||||| || |||||||| |||||||||||||||||  ||||||| ||||| ||||||||| ||||||| |||||||||
atgactgatgactcatactgtagatttgttcagatatgcc--ttaggcaatgactgttactgtttcatgtaac-atctaatgaaaacaataattggtttgtagGGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTGGTACTCTTGGCCTTGATATGATGTTCCGGACATGTACTGTGCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G020096_T01 (Zea mays), 3'ss of exon 4
----cagcaggccctattctttgtagtaattgaacaatgacagttctttcttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
     | |   |  ||  |||  |   |  ||    | | |  ||       ||  |||| || | |   |     | |  |||  | |    | |      ||||||||||| | || |||||||| |||||||||||||||||  | ||||| ||||| ||||||||| ||||||| |||||||||
ctgataactcactgtagccttgttcagatatgccttagggc--ttaggcaacgatttttactgtttcg--tgaaaacctgatgaaaacaatcatcggcttgtagGGAAGATACAAAATAATGAGGAATTACATGCCTAAAGTTGGTACCCTTGGCCTTGATATGATGTTCCGGACATGTACTGTGCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: AC183590.4_FGT001 (Zea mays), 3'ss of exon 2
cagcaggccctattctttgtagtaattgaacaatgacagttctttcttgacctttagtggtgcaattacctgctt----tctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
    |    ||||  | |      |    |   | | |   |||| ||| |    |       | |    ||  |    ||| |  | ||   |||      ||||||||||||| || |||||||| ||||||||||||||| |  ||||||| ||||| ||||||||| | ||||| |||||||||
---tatatactatagtattctaataccatagttttagaaaactttgttggcaaacacgcccttactgttttgtgtaacatctaatgaaata-attggcttgtagGGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTTGTACTCTTGGCCTTGATATGATGTTCCGAACATGTACTGTGCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G459896_T01 (Zea mays), 3'ss of exon 3
cagcaggccctattctttgtagtaattgaacaatgacagttctttcttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
                                            |  ||||  ||| || |    ||   |    ||| |  | ||   |||      ||||||||||||| || |||||||| |||||||||||||||||  ||||||  ||||| ||||||||| | ||||| ||||| |||
-------------------------------------------gtaatgactattactgtt----ttgtgtaacatctaatgaaata-attggcttgtagGGAAGATACGAAATAATGAGGAATTACATGCCTAAAGTTGGTACTCTTGACCTTGATATGATGTTCCGAACATGTACTGTACAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------cagcaggccctattctttg-tagtaattgaacaatgacag--ttctttcttgaccttt------agtggtgcaattacctgctt----------tctgactatatgtgttgt----tgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
                                                           |||    |||| | || |  ||  |   ||| |   |  || |||||||   |||      |||  | | || ||  |             | ||||    |||  |||    ||  ||||| ||||||||||| ||||| ||||||||||| ||||||||  | ||||| ||||| |||||| || | || || ||||| |||
gtatgacgctttctctattcttaagattgaagaaagttaacatctgtttgtttctaattcagataatattatctgattctacatagccaacgttcggattatttcttggtgtttgtgttaagttttcctatgacgagtcaggcagtaagatttgacatagtgtaatgtgttctgtgcagGGGAGATACGACATTATGAGAAACTACATGCCGAAAGTTGGTACCCTTGGTCTTGATATGATGCTCCGAACGTGTACTGTTCAG

upper sequence: GLYMA05G37850.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 5
cagcaggccctattctttgtagtaattgaacaatg-acagttctttcttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
   |  | | | ||  |  |  |  ||   || |  |  ||||  | |   ||||| ||  |   ||||| ||| |  ||||    ||| || | || |||||||||||||| || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||
gtacttgactttttgatcatgttgcttttccattctatggttcgatttcagccttttgtactttgattacttgcatattgacatagtgt-ttttggctcagGGAAGATACGAGATTATGAGGAATTACATGCCCAAAGTTGGCTCACTTGGACTTGATATGATGTTTAGAACATGTACTGTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348212|gb|BM892744.1|BM892744
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|120496239|gb|EH224406.1|EH224406
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|120493888|gb|EH222055.1|EH222055
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
EST: gi|9204205|gb|BE330429.1|BE330429
EST:     TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAG                         GGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG
genomic: TTGGTTTCCAGCCAAAGTGGGGAATCAAAGACATACCTATAATGCCAAAGgtagtttttt ... tgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgacctttagtggtgcaattacctgctttctgactatatgtgttgttgcacagGGAAGATACGACATCATGAGGAACTACATGCCTAAAGTTGGCTCTCTTGGGCTTGACATGATGTTCAGGACATGCACTGTGCAG
                             ttctgac  putative branch site (score: 2)
                                  actatat  TA-rich tract