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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatccttgtagaattttgagtttcaatgcaggtttatagctttcttagtaaatataaatagtctcatttgtttcatgtttatgtggtattttcatttatatgcagTTGATGAGGCACTATGTCACCCATATCTTTCATCACTCCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC

Basic information

species Glycine max
transcript GLYMA05G37480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g00270.t01 (Vitis vinifera), 3'ss of exon 5
gtatgcatccttgtagaattttgagtttcaatgcaggtttatagctttcttagtaaatataaatagtctcatttgtttcatgt--ttatgtggtattttcatttatatgcagTTGATGAGGCACTATGTCACCCATATCTTTCATCACTCCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC
             |  || ||  |  ||  |||||  | | ||      | |     | |     ||||  |||||||   |   | || | ||  | |   || | |||||| || ||||||||||||||||||||| | ||||| || ||  | |||||||||||||| || |||||||| || || ||||||||||| || ||  || |
-------gtacaatgaaagttaaaactttcatgcacatctctaaggaa-tgacctgtttttcgaggtctattttgtttttgggaatgattttgt-ctcttgcttctttgcagTCGACGAGGCACTATGTCACCCATATTTGTCATCTCTACATGATATCAATGATGAGCCTGTTTGTCCCAGTCCTTTTAGTTTTGATTTCGAGCAATCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31475071|gb|CD417099.1|CD417099
EST:     GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTG                         TTGATGAGGCACTATGTCACCCATATCTTTCATCACTCCACAACATCAATG
genomic: GGACCTGTTAGAAAAGATGCTGATCTTTGATCCAAACAAACGCATTACTGgtatgcatcc ... ttatatgcagTTGATGAGGCACTATGTCACCCATATCTTTCATCACTCCACAACATCAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataaatagtctcatttgtttcatgtttatgtggtattttcatttatatgcagTTGATGAGGCACTATGTCACCCATATCTTTCATCACTCCACAACATCAATGATGAGCCAGTCTGTCCCAGGCCATTCAGTTTTGATTTTGATCAGCCAAC
                                      ttttcattt  CT-rich tract
                                    tattttcatttatat  TA-rich tract