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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaccattgattctttatcttataaacaattagtgaaaaagtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTGATC

Basic information

species Glycine max
transcript GLYMA05G36930.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtaacaccattgattctttatcttataaacaat--tagtgaaaaagtaataaa----caaacataggtt----agcttcttttgtgtgtatt-atatcaaacatcacacattagtgaa---taagcagctttccttgtttcttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTGATC
                    |   |  ||| ||   |  ||||  |   |||  || ||    | | ||  |    |  || | ||      |  ||   | || || ||  | |   ||     ||  || ||| |   || ||   ||   ||||||  |    |||| |  | |||||||| || | ||| |   || |  | |||||| ||  |||||||||||||||||| | |||||||||||| ||||| ||||||||   | 
gtaatatatgaaattgatcattgaatgatttatgtgtgttcttgaattgaatggtattgtttgatttatggattttctgacgtgggaatggaaaattgaatggtttggatccagaatgaatggagcatgtttgtggaatgtaggctaattgtgttgttttctttgagcagATGTTAATGCAAGGGAAGGGTGGTCGCTATACCTCGGTTTTCCAGCAATATCAGCAGAAGGCTGAGTTTTTCATGTGTTCATGCCTGGGAAAGGGCACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193465496|gb|FK431561.1|FK431561
EST:     AATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAG                         TTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCC
genomic: AATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccat ... ttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcagTTCCTGATGCAAGGCAAAGCTGGGCATCATGCTCCAGTTTTCGAGAGATATCAGCAGAAGGCTGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTGATC
                             cagctttccttgtttc  CT-rich tract
                     tgaataa  TA-rich tract