1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atagtcacagtttggccattcttacatgcctatattcccatttcctaagatctgccttagatttcttcaagaatcttacagaacggaccttttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG
species | Glycine max |
transcript | GLYMA05G36850.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGA GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCAEST: gi|298193906|gb|HO040554.1|HO040554
genomic: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGAgtatgttctc ... tttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCA
EST: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGA GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCAEST: gi|261497131|gb|GT185199.1|GT185199
genomic: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGAgtatgttctc ... tttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCA
EST: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGA GTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCA
genomic: CTGCATTGACTGTTTTTGGAAACGATTATAAAACAACTGACGGCACTGGAgtatgttctc ... tttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCA
taagatctgccttagatttcttcaagaatcttacagaacggaccttttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG
atcttac putative branch site (score: 3)
ccttttttttc putative PPT
ttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtcacagtttggccattcttacatgcctatattcccatttcctaagatctgccttagatttcttcaagaatcttacagaacggaccttttttttcagGTTCGTGATTACATTCATGTTCTTGATTTAGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - -ccattct
- - - - - - - - - - - - catgcct
- - - - - - - - - - - - - - - - - - -ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgcctt