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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaacattttttttagttttaaatacttcagaatcttaacagcgttcttctgtcaaccttgaagttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAG

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------------------------gtaagaaacattttttttagttt-taaatacttcagaatcttaacagcgttcttctg---tcaaccttgaagttatc---attatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAG
                                                                                               || || | |  ||| ||    | | | ||  | | ||||| |   | |  | | ||      | | || | | |     ||| | |  ||||||  ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| || ||||| || || ||||| ||| | |||||||||||||||||| 
gcaagagaactaaatcccatacatatgcttgcatgaaataaatgaagttctgcaatacgatttctccatatgcaatgactatagacctttgggaatatgacagagatttcttgacatatgattagcttaaaatctaagatgagaacctgtgaatcttatcatgtaataactggaattgtttgctcttattctttcagTCAATGATTGGACATGGGCTTGGGGCTGCCGGTGGATTGGAAGCCATAGCAACCATAAAAGCAATCACCACTGGATGGATACATCCAACCATTAACCAAT

upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S52_45V6.1 (Physcomitrella patens), 3'ss of exon 5
-----------------------------------------------------------------------------gtaagaaacattttttttag-----ttttaaatacttcagaatcttaacagc--gttcttctgtca-accttgaagttatcattatattttctt--atcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAG
                                                                             |||    | ||||      |     ||||    |    |||| ||| ||     |||   |||| |   ||  ||   ||  | ||  ||| ||  |  |||| |||| |||||||| ||  ||||||| ||||||||||| |||||||| || || ||||| ||||| ||   |||||| ||| |||| ||| | ||||||||| 
gtacttatccttgaatatttactgaagatttagtcttggtaatatgaggtgcttgcctcagtttagaaatagttattgtagtctagatttccaaacggtattttttcggaaaaatagaaccttgacgaacggttggactgtgatgtctctaatgcattttaatgatttgttggaatgttttagTCTATGATTGGGCACTGTCTTGGAGCTGCTGGTGGCTTGGAAGCGATTGCTACAATTAAAGCTATCCAAACTGGATGGCTGCACCCATCAATTAACCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagcgttcttctgtcaaccttgaagttatcattatattttcttatcgtttcagTCAATGATTGGTCATGGTCTTGGGGCTGCTGGTGGTTTGGAAGCCATAGCAACAATCAAAGCCATAACAACTGGCTGGTTGCATCCAACCATTAACCAAG
 tcttaac  putative branch site (score: 2)
                                      ttttcttatcgtttc  putative PPT
                        aagttatcattatatt  TA-rich tract