1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaccgtagtctgtaatgtagcttttaaattacttgtcccgaagtcataaatattatttacgcaattagattgctaagcataacactttctaatcgttgtgtggcaatatctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAA
species | Glycine max |
transcript | GLYMA05G36620.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|254333979|gb|GR848897.1|GR848897
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|7147560|gb|AW509482.1|AW509482
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|26058351|gb|CA801265.1|CA801265
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|192314502|gb|FK006344.1|FK006344
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|298181367|gb|HO022806.1|HO022806
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|298196006|gb|HO044397.1|HO044397
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGEST: gi|298172742|gb|HO019782.1|HO019782
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCCCTCTCGGAATTGAAACTGTTGEST: gi|298169283|gb|HO020643.1|HO020643
genomic: TGCAGTGCAAGGAAGCATTTTGAGTGGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
EST: GGAGAGGGTGGTGAAGAAACCAAAG ACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
genomic: GGAGAGGGTGGTGAAGAAACCAAAGgtaccgtagt ... atctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTG
aattagattgctaagcataacactttctaatcgttgtgtggcaatatctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAA
ttctaat putative branch site (score: 2)
tctatcc putative PPT
aatatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccgtagtctgtaatgtagcttttaaattacttgtcccgaagtcataaatattatttacgcaattagattgctaagcataacactttctaatcgttgtgtggcaatatctatccagACATCCTTCTCCTGGATGTGGCTCCCCTCACTCTCGGAATTGAAACTGTTGGTGGAGTCATGACAAAGTTGATTCCCAGAAACACTGTTATCCCAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG