1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtataaccaagtcctttttgtgtgtccccttccctctacaaggctactgattcaatgcaacttttgtagtactttttttgtaattatttcgttcctcggcatttggattctgtaatttttgcttgcgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
species | Glycine max |
transcript | GLYMA05G36020.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGTACGGTCTCGAAGACCTAGAGCGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208183266|gb|GD984036.1|GD984036
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTNTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193346442|gb|FK311726.1|FK311726
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193621668|gb|FK568554.1|FK568554
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193393841|gb|FK359918.1|FK359918
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208069085|gb|GD863827.1|GD863827
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTGTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208302418|gb|GE097033.1|GE097033
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|21638936|gb|BM139982.1|BM139982
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAAACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|120533128|gb|EH261261.1|EH261261
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|207752688|gb|GD722748.1|GD722748
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCEST: gi|208133373|gb|GD930396.1|GD930396
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACT-CCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTNTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|192302769|gb|FG993789.1|FG993789
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208187070|gb|GD985114.1|GD985114
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTGTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|192302768|gb|FG993788.1|FG993788
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208264236|gb|GE064356.1|GE064356
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGGAG GGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCEST: gi|208071910|gb|GD871438.1|GD871438
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagG-CTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAA-CTGTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCC-EST: gi|208233984|gb|GE029541.1|GE029541
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTACAAAACTATAACAAGCGAAGGCCTTCTCEST: gi|207781717|gb|GD754422.1|GD754422
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTT-CAAAACTATAACAAGCGAAGGCCTTCTC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTGTAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193324811|gb|FK290151.1|FK290151
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|254318674|gb|GR828618.1|GR828618
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193328494|gb|FK294710.1|FK294710
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|120533275|gb|EH261408.1|EH261408
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|193538984|gb|FK497296.1|FK497296
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208220451|gb|GE017671.1|GE017671
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208044651|gb|GD841075.1|GD841075
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCEST: gi|208120625|gb|GD918012.1|GD918012
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCC
EST: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAG GCTGTTCAAAA
genomic: ATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGgtataaccaa ... ttgtaagcagGCTGTTCAAAA
attatttcgttcctcggcatttggattctgtaatttttgcttgcgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
attctgtaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaccaagtcctttttgtgtgtccccttccctctacaaggctactgattcaatgcaacttttgtagtactttttttgtaattatttcgttcctcggcatttggattctgtaatttttgcttgcgttgtaagcagGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG