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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcaatcttctgtaagttagtcttgttcttatgcatctggtacaggagctctatcaggtatatctttcattgtctgataggacccttttctttgtttttcccagGCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCGCCTCTTATACCTGACCTCTTAGGTATCATTGCAGGACATCTGTACTACT

Basic information

species Glycine max
transcript GLYMA05G35990.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346875|gb|BM891763.1|BM891763
EST:     GAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCACTTAAG                         GCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCG
genomic: GAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCACTTAAGgtatgtttca ... tttttcccagGCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCG
EST: gi|298164512|gb|HO014157.1|HO014157
EST:     GAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCACTTAAG                         GCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCG
genomic: GAGAATTTCCGAATGCCCAAATCAACATATATGGGCTTGTTGCACTTAAGgtatgtttca ... tttttcccagGCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatcaggtatatctttcattgtctgataggacccttttctttgtttttcccagGCCTTCTATCTTCCATGGGCGATGCTGGCTTTGGACATCATTTTTGGATCGCCTCTTATACCTGACCTCTTAGGTATCATTGCAGGACATCTGTACTACT
                      gtctgat  putative branch site (score: 4)
                                 cccttttctttgtttt  putative PPT
                                    ttttctttgttttt  TA-rich tract